Publications

Publications (101)
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  1. Sainger R, Grau JB, Branchetti E, Poggio P, Seefried WF, Field BC, Acker MA, Gorman RC, Gorman JH 3rd, Hargrove CW 3rd, Bavaria JE, Ferrari G. Human myxomatous mitral valve prolapse: Role of bone morphogenetic protein 4 in valvular interstitial cell activation. J Cell Physiol. 2011 Nov 21. (PubMed)
  2. Lai NC, Tang T, Gao MH, Sato M, Miyanohara A, Hammond HK. Improved Function of the Failing Rat Heart by Regulated Expression of Insulin-like Growth Factor-I via Intramuscular Gene Transfer. Hum Gene Ther. 2011 Oct 21. (PubMed)
  3. Zhao P, Zhao L, Zhang T, Qi Y, Wang T, Liu K, Wang H, Feng H, Jin H, Qin C, Yang S, Xia X. Innate immune response gene expression profiles in central nervous system of mice infected with rabies virus. Comp Immunol Microbiol Infect Dis. 2011 Dec;34(6):503-12. (PubMed)
  4. Peng W, Bao Y, Sawicki JA. Epithelial cell-targeted transgene expression enables isolation of cyan fluorescent protein (CFP)-expressing prostate stem/progenitor cells. Transgenic Res. 2011 Oct;20(5):1073-86. (PubMed)
  5. Stechova K, Kolar M, Blatny R, Halbhuber Z, Vcelakova J, Hubackova M, Petruzelkova L, Sumnik Z, Obermannova B, Pithova P, Stavikova V, Krivjanska M, Neuwirth A, Kolouskova S, Filipp D. Healthy first degree relatives of patients with type 1 diabetes exhibit significant differences in basal gene expression pattern of immunocompetent cells compared to controls: expression pattern as predeterminant of autoimmune diabetes. Scand J Immunol. 2011 Sep 16. doi: 10.1111/j.1365-3083.2011.02637.x. (PubMed)
  6. Park C, Yan W, Ward SM, Hwang SJ, Wu Q, Hatton WJ, Park JK, Sanders KM, Ro S. MicroRNAs dynamically remodel gastrointestinal smooth muscle cells. PLoS One. 2011 Apr 14;6(4):e18628. (PubMed)
  7. Chen H, Sun H, You F, Sun W, Zhou X, Chen L, Yang J, Wang Y, Tang H, Guan Y, Xia W, Gu J, Ishikawa H, Gutman D, Barber G, Qin Z, Jiang Z. Activation of STAT6 by STING is critical for antiviral innate immunity. Cell. 2011 Oct 14;147(2):436-46. (PubMed)
  8. Zhang R, He Y, Zhang X, Xing B, Sheng Y, Lu H, Wei Z. Estrogen receptor-regulated microRNAs contribute to the BCL2/BAX imbalance in endometrial adenocarcinoma and precancerous lesions. Cancer Lett. 2012 Jan 28;314(2):155-65. (PubMed)
  9. Zhao P, Zhao L, Zhang T, Wang H, Qin C, Yang S, Xia X. Changes in microRNA expression induced by rabies virus infection in mouse brains. Microb Pathog. 2011 Oct 12. (PubMed)
  10. Kamberov YG, Kim J, Mazitschek R, Kuo WP, Whitman M. Microarray profiling reveals the integrated stress response is activated by halofuginone in mammary epithelial cells. BMC Res Notes. 2011 Oct 5;4:381. (PubMed)
  11. Li D, Chen P, Li XY, Zhang LY, Xiong W, Zhou M, Xiao L, Zeng F, Li XL, Wu MH, Li GY. Grade-specific expression profiles of miRNAs/mRNAs and docking study in human grade I-III astrocytomas. OMICS. 2011 Oct;15(10):673-82. (PubMed)
  12. Liao DL, Cheng MC, Lai CH, Tsai HJ, Chen CH. Comparative gene expression profiling analysis of lymphoblastoid cells reveals neuron-specific enolase gene (ENO2) as a susceptibility gene of heroin dependence. Addict Biol. 2011 Oct 13. (PubMed)
  13. Yang J, Hu X, Zimmerman M, Torres CM, Yang D, Smith SB, Liu K. IRF8 Regulates Bax Transcription In Vivo in Primary Myeloid Cells. J Immunol. 2011 Nov 1;187(9):4426-30. (PubMed)
  14. Ha Y, Dun Y, Thangaraju M, Duplantier J, Dong Z, Liu K, Ganapathy V, Smith SB. Sigma receptor 1 modulates endoplasmic reticulum stress in retinal neurons. Invest Ophthalmol Vis Sci. 2011 Jan 25;52(1):527-40. (PubMed)
  15. Wu MT, Lee TC, Wu IC, Su HJ, Huang JL, Peng CY, Wang W, Chou TY, Lin MY, Lin WY, Huang CT, Pan CH, Ho CK. Whole genome expression in peripheral-blood samples of workers professionally exposed to polycyclic aromatic hydrocarbons. Chem Res Toxicol. 2011 Oct 17;24(10):1636-43. (PubMed)
  16. Huber K, Doyon G, Plaks J, Fyne E, Mellors JW, Sluis-Cremer N. Inhibitors of histone deacetylases: correlation between isoform specificity and reactivation of HIV type 1 (HIV-1) from latently infected cells. J Biol Chem. 2011 Jun 24;286(25):22211-8. (PubMed)
  17. Rathore K, Wang HC. Green tea catechin extract in intervention of chronic breast cell carcinogenesis induced by environmental carcinogens. Mol Carcinog. 2011 Aug 31. (PubMed)
  18. Saini S, Yamamura S, Majid S, Shahryari V, Hirata H, Tanaka Y, Dahiya R. MicroRNA-708 Induces Apoptosis and Suppresses Tumorigenicity in Renal Cancer Cells. Cancer Res. 2011 Sep 20. (PubMed)
  19. Chang CT, Lin H, Ho TY, Li CC, Lo HY, Wu SL, Huang YF, Liang JA, Hsiang CY. Comprehensive Assessment of Host Responses to Ionizing Radiation by Nuclear Factor-kB Bioluminescence Imaging-Guided Transcriptomic Analysis. PLoS One. 2011;6(8):e23682. (PubMed)
  20. Shen JQ, Shen J, Wang XP. Expression of insulin-like growth factor binding protein-4 (IGFBP-4) in acute pancreatitis induced by l-arginine in mice. Acta Histochem. 2011 Aug 10. (PubMed)
  21. Wu MT, Lee TC, Wu IC, Su HJ, Huang JL, Peng CY, Wang W, Chou TY, Lin MY, Lin WY, Huang CT, Pan CH, Ho CK. Whole Genome Expression in Peripheral-Blood Samples of Workers Professionally Exposed to Polycyclic Aromatic Hydrocarbons. Chem Res Toxicol. 2011 Sep 2. (PubMed)
  22. Spencer C, Montalvo J, McLaughlin SR, Bryan BA. Small molecule inhibition of cytoskeletal dynamics in melanoma tumors results in altered transcriptional expression patterns of key genes involved in tumor initiation and progression. Cancer Genomics Proteomics. 2011 Mar-Apr;8(2):77-85. (PubMed)
  23. Han X, Wu Z, Di J, Pan Y, Zhang H, Du Y, Cheng Z, Jin Z, Wang Z, Zheng Q, Zhang P, Wang Y. CXCL9 attenuated chemotherapy-induced intestinal mucositis by inhibiting proliferation and reducing apoptosis. Biomed Pharmacother. 2011 Jun 23. (PubMed)
  24. Wang CY, Hua CY, Hsu HE, Hsu CL, Tseng HY, Wright DE, Hsu PH, Jen CH, Lin CY, Wu MY, Tsai MD, Kao CF. The C-Terminus of Histone H2B Is Involved in Chromatin Compaction Specifically at Telomeres, Independently of Its Monoubiquitylation at Lysine 123. PLoS One. 2011;6(7):e22209. Epub 2011 Jul 29. (PubMed)
  25. Fan LC, Chiang WF, Liang CH, Tsai YT, Wong TY, Chen KC, Hong TM, Chen YL. a-Catulin knockdown induces senescence in cancer cells. Oncogene. 2011 Jun 9;30(23):2610-21. (PubMed)
  26. Mahmoud L, Al-Saif M, Amer HM, Sheikh M, Almajhdi FN, Khabar KS. Green fluorescent protein reporter system with transcriptional sequence heterogeneity for monitoring the interferon response. J Virol. 2011 Sep;85(18):9268-75. (PubMed)
  27. Fuchs G, Diges C, Kohlstaedt LA, Wehner KA, Sarnow P. Proteomic Analysis of Ribosomes: Translational Control of mRNA Populations by Glycogen Synthase GYS1. J Mol Biol. 2011 Jul 1;410(1):118-30. (PubMed)
  28. Wu J, Liu Z, Shao C, Gong Y, Hernando E, Lee P, Narita M, Muller W, Liu J, Wei JJ. HMGA2 overexpression-induced ovarian surface epithelial transformation is mediated through regulation of EMT genes. Cancer Res. 2011 Jan 15;71(2):349-59. (PubMed)
  29. Qu Y, Wang J, Ray PS, Guo H, Huang J, Shin-Sim M, Bukoye BA, Liu B, Lee AV, Lin X, Huang P, Martens JW, Giuliano AE, Zhang N, Cheng NH, Cui X. Thioredoxin-like 2 regulates human cancer cell growth and metastasis via redox homeostasis and NF-KB signaling. J Clin Invest. 2011 Jan 4;121(1):212-25. (PubMed)
  30. Zhu XL, Zeng YF, Guan J, Li YF, Deng YJ, Bian XW, Ding YQ, Liang L. FMNL2 is a positive regulator of cell motility and metastasis in colorectal carcinoma. J Pathol. 2011 Jul;224(3):377-88. (PubMed)
  31. Wang J, Chen L, Wen S, Zhu H, Yu W, Moskowitz IP, Shaw GM, Finnell RH, Schwartz RJ. Defective sumoylation pathway directs congenital heart disease. Birth Defects Res A Clin Mol Teratol. 2011 Jun;91(6):468-76. (PubMed)
  32. Dhiman R, Bandaru A, Barnes PF, Saha S, Tvinnereim A, Nayak RC, Paidipally P, Valluri VL, Rao LV, Vankayalapati R. c-Maf-dependent growth of Mycobacterium tuberculosis in a CD14(hi) subpopulation of monocyte-derived macrophages. J Immunol. 2011 Feb 1;186(3):1638-45. (PubMed)
  33. Sehic A, Risnes S, Khuu C, Khan QE, Osmundsen H. Effects of in vivo transfection with anti-miR-214 on gene expression in murine molar tooth germ. Physiol Genomics. 2011 May 13;43(9):488-98. (PubMed)
  34. Cai W, Sun Y, Wang W, Han C, Ouchida M, Xia W, Zhao X, Sun B. The Effect of SYT-SSX and Extracellular Signal-Regulated Kinase (ERK) on Cell Proliferation in Synovial Sarcoma. Pathol Oncol Res. 2011 Jun;17(2):357-67. (PubMed)
  35. Udensi UK, Cohly HH, Graham-Evans BE, Ndebele K, Garcia-Reyero N, Nanduri B, Tchounwou PB, Isokpehi RD. Aberrantly Expressed Genes in HaCaT Keratinocytes Chronically Exposed to Arsenic Trioxide. Biomark Insights. 2011 Feb 8;6:7-16. (PubMed)
  36. Zhang X, Wan G, Berger FG, He X, Lu X. The ATM kinase induces microRNA biogenesis in the DNA damage response. Mol Cell. 2011 Feb 18;41(4):371-83. (PubMed)
  37. Enquobahrie DA, Williams MA, Qiu C, Siscovick DS, Sorensen TK. Global maternal early pregnancy peripheral blood mRNA and miRNA expression profiles according to plasma 25-hydroxyvitamin D concentrations. J Matern Fetal Neonatal Med. 2011 Jan 10. (PubMed)
  38. Lambros MP, Parsa C, Mulamalla H, Orlando R, Lau B, Huang Y, Pon D, Chow M. Identifying cell and molecular stress after radiation in a three-dimensional (3-D) model of oral mucositis. Biochem Biophys Res Commun. 2011 Jan 7. (PubMed)
  39. Janvilisri T, Scaria J, Chang YF. Transcriptional profiling of Clostridium difficile and Caco-2 cells during infection. J Infect Dis. 2010 Jul 15;202(2):282-90. (PubMed)
  40. Chen YY, Chiang SY, Wu HC, Kao ST, Hsiang CY, Ho TY, Lin JG. Microarray analysis reveals the inhibition of nuclear factor-kappa B signaling by aristolochic acid in normal human kidney (HK-2) cells. Acta Pharmacol Sin. 2010 Feb;31(2):227-36. (PubMed)
  41. Kumar VB, Yuan TC, Liou JW, Yang CJ, Sung PJ, Weng CF. Antroquinonol inhibits NSCLC proliferation by altering PI3K/mTOR proteins and miRNA expression profiles. Mutat Res. 2010 Dec 24. (PubMed)
  42. Koh Y, Kim DY, Park SH, Jung SH, Park E, Kim HJ, Sohn SK, Joo YD, Kim SJ, Shin HJ, Kim SH, Song HS, Chung J, Kim I, Yoon SS, Kim BK, Shin SH, Chung YJ, Park S. GSTT1 copy number gain is a poor predictive marker for escalated-dose imatinib treatment in chronic myeloid leukemia: genetic predictive marker found using array comparative genomic hybridization. Cancer Genet Cytogenet. 2010 Dec;203(2):215-21. (PubMed)
  43. Yin B, Li KH, An T, Chen T, Peng XZ. Nectin-like molecule 1 inhibits the migration and invasion of U251 glioma cells by regulating the expression of an extracellular matrix protein osteopontin. Chin Med Sci J. 2010 Jun;25(2):100-4. (PubMed)
  44. Li Y, Zhang Q, Yin X, Yang W, Du Y, Hou P, Ge J, Liu C, Zhang W, Zhang X, Wu Y, Li H, Liu K, Wu C, Song Z, Zhao Y, Shi Y, Deng H. Generation of iPSCs from mouse fibroblasts with a single gene, Oct4, and small molecules. Cell Res. 2010 Oct 19. (PubMed)
  45. Assidi M, Montag M, Van Der Ven K, Sirard MA. Biomarkers of human oocyte developmental competence expressed in cumulus cells before ICSI: a preliminary study. J Assist Reprod Genet. 2010 Oct 16. (PubMed)
  46. Jung SH, Yim SH, Hu HJ, Jung CK, Lee SH, Kim DH, Chung YJ. Copy number alterations and expression profiles of candidate genes in a pulmonary inflammatory myofibroblastic tumor. Lung Cancer. 2010 Nov;70(2):152-7. (PubMed)
  47. Ha Y, Dun Y, Thangaraju M, Duplantier JN, Dong Z, Liu K, Ganapathy V, Smith SB. Sigma receptor 1 modulates ER stress in retinal neurons. Invest Ophthalmol Vis Sci. 2010 Sep 1. (PubMed)
  48. Guo L, Mei N, Xia Q, Chen T, Chan PC, Fu PP. Gene expression profiling as an initial approach for mechanistic studies of toxicity and tumorigenicity of herbal plants and herbal dietary supplements. J Environ Sci Health C Environ Carcinog Ecotoxicol Rev. 2010 Jan;28(1):60-87. (PubMed)
  49. Jiang Y, Suo G, Sadarangani A, Cowan B, Wang JY. Expression profiling of protein tyrosine kinases and their ligand activators in leiomyoma uteri. Syst Biol Reprod Med. 2010 Aug;56(4):318-26. (PubMed)
  50. Kim JH, Moon JY, Park EY, Lee KH, Hong YC. Changes in Oxidative Stress Biomarker and Gene Expression Levels in Workers Exposed to Volatile Organic Compounds. Ind Health. 2010 Sep 1. (PubMed)
  51. Mahapatra S, Ayoubi P, Shaw EI. Coxiella burnetii Nine Mile II proteins modulate gene expression of monocytic host cells during infection. BMC Microbiol. 2010 Sep 20;10:244. (PubMed)
  52. Wu Z, Han X, Qin S, Zheng Q, Wang Z, Xiang D, Zhang J, Lu H, Wu M, Zhu S, Yu Y, Wang Y, Han W. Interleukin 1 receptor antagonist reduces lethality and intestinal toxicity of 5-fluorouracil in a mouse mucositis model. Biomed Pharmacother. 2010 Sep 29. (PubMed)
  53. Cheng HM, Li CC, Chen CY, Lo HY, Cheng WY, Lee CH, Yang SZ, Wu SL, Hsiang CY, Ho TY. Application of bioactivity database of Chinese herbal medicine on the therapeutic prediction, drug development, and safety evaluation. J Ethnopharmacol. 2010 Aug 14. [Epub ahead of print]. (PubMed)
  54. Hsiao YH, Su YA, Tsai HD, Mason JT, Chou MC, Man YG. Increased invasiveness and aggressiveness in breast epithelia with cytoplasmic p63 expression. Int J Biol Sci. 2010 Aug 8;6(5):428-42. (PubMed)
  55. Qi HH, Sarkissian M, Hu GQ, Wang Z, Bhattacharjee A, Gordon DB, Gonzales M, Lan F, Ongusaha PP, Huarte M, Yaghi NK, Lim H, Garcia BA, Brizuela L, Zhao K, Roberts TM, Shi Y. Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development. Nature. 2010 Jul 22;466(7305):503-7. (PubMed)
  56. Jun-Mo Yang, Seon Mi Sim, Hyo-Yeon Kim, Geon Tae Park. Expression of the homeobox gene, HOPX, is modulated by cell differentiation in human keratinocytes and is involved in the expression of differentiation markers. Eur J Cell Biol. 2010 Jul;89(7):537-46. (PubMed)
  57. Lai CY, Hung JT, Lin HH, Yu AL, Chen SH, Tsai YC, Shao LE, Yang WB, Yu J. Immunomodulatory and adjuvant activities of a polysaccharide extract of Ganoderma lucidum in vivo and in vitro. Vaccine. 2010 Jul 12;28(31):4945-54. (PubMed)
  58. Wang J, Klysik E, Sood S, Johnson RL, Wehrens XH, Martin JF. Pitx2 prevents susceptibility to atrial arrhythmias by inhibiting left-sided pacemaker specification. Proc Natl Acad Sci U S A. 2010 May 25;107(21):9753-8. (PubMed)
  59. Sehic A, Risnes S, Khan QE, Khuu C, Osmundsen H. Gene expression and dental enamel structure in developing mouse incisor. Eur J Oral Sci. 2010 Apr;118(2):118-30. (PubMed)
  60. Fong S, King F, Shtivelman E. CC3/TIP30 affects DNA damage repair. BMC Cell Biol. 2010 Apr 7;11:23. (PubMed)
  61. Zhang D, Deng X, Ji Z, Shen X, Dong L, Wu M, Gu T, Liu Y. Long-term hepatotoxicity of polyethylene-glycol functionalized multi-walled carbon nanotubes in mice. Nanotechnology. 2010 Apr 30;21(17):175101. (PubMed)
  62. Yen Kuang Li, Den-Kai Yang, Yun-Chu Chen, Hung-Ju Su, Jui-Chuang Wu, Yui Whei Chen-Yang. A novel three-dimensional aerogel biochip for molecular recognition of nucleotide acids. Acta Biomater. 2010 Apr;6(4):1462-70. (PubMed)
  63. Lei Guo, Nan Mei, Wayne Liao, Po-Chuen Chan, and Peter P. Fu. Ginkgo biloba extract induces gene expression changes in xenobiotics metabolism and the Myc-centered network. OMICS. 2010 Feb;14(1):75-90. (PubMed)
  64. Chang M, Hsiao JK, Yao M, Chien LY, Hsu SC, Ko BS, Chen ST, Liu HM, Chen YC, Yang CS, Huang DM. Homologous RBC-derived vesicles as ultrasmall carriers of iron oxide for magnetic resonance imaging of stem cells. Nanotechnology. 2010 Jun 11;21(23):235103. (PubMed)
  65. Yao G, Yin M, Lian J, Tian H, Liu L, Li X, Sun F. MicroRNA-224 is involved in transforming growth factor-beta-mediated mouse granulosa cell proliferation and granulosa cell function by targeting Smad4. Mol Endocrinol. 2010 Mar;24(3):540-51. (PubMed)
  66. Weng YI, Huang TH, Yan PS. Methylated DNA immunoprecipitation and microarray-based analysis: detection of DNA methylation in breast cancer cell lines. Methods Mol Biol. 2009;590:165-76. (PubMed)
  67. Norton SK, Dellinger A, Zhou Z, Lenk R, Macfarland D, Vonakis B, Conrad D, Kepley CL. A new class of human mast cell and peripheral blood basophil stabilizers that differentially control allergic mediator release. Clin Transl Sci. 2010 Aug;3(4):158-69. (PubMed)
  68. KR Jiang, JL Huang, CC Chen, HJ Su, JC Wu Effect of co-axially hybridized gene targets on hybridization efficiency of microarrayed DNA probes. J Taiwan Inst Chem Eng. 2011, Volume 42, Issue 1, January , Pages 5-12 . (ScienceDirect)
  69. Liu K, Casey J, Pichichero M. Serum intercellular adhesion molecule 1 variations in young children with acute otitis media. Clin Vaccine Immunol. 2010 Dec;17(12):1909-16. (PubMed)
  70. Lei Guo a, Qiang Shi, Stacey Dial, Qingsu Xia , Nan Mei, Quan-zhen Li, Po-Chuen Chan, Peter Fu. Gene expression profiling in male B6C3F1 mouse livers exposed to kava identifies--changes in drug metabolizing genes and potential mechanisms linked to kava toxicity. Food Chem Toxicol. 2010 Feb;48(2):686-96. (PubMed)
  71. Chun-Liang Tung , Pei-Hsuan Hou, Yung-Ling Kao , Yu-Wen Huang, Chiung-Chun Shen, Yi-Hsin Cheng, Shu-Fen Wu, Moon-Sing Lee, Chin Li. SOX2 modulates alternative splicing in transitional cell carcinoma. Biochem Biophys Res Commun, 2010 Mar 12;393(3):420-5. (PubMed)
  72. Ji Z, Zhang D, Li L, Shen X, Deng X, Dong L, Wu M, Liu Y. The hepatotoxicity of multi-walled carbon nanotubes in mice. Nanotechnology. 2009 Nov 4;20(44):445101. (PubMed)
  73. Lian J, Zhang X, Tian H, Liang N, Wang Y, Liang C, Li X, Sun F. Altered microRNA expression in patients with non-obstructive azoospermia. Reprod Biol Endocrinol. 2009 Feb 11;7:13. (PubMed)
  74. Philippe M. Campeau, Moutih Rafei, Marie-Noëlle Boivin, Ying Sun, Gregory A. Grabowski, and Jacques Galipeau. Characterization of Gaucher disease bone narrow mesenchymal stromal cells reveals an altered inflammatory secretome. BLOOD, 8 OCTOBER 2009, VOLUME 114, NUMBER 15:3181-3190. (PubMed)
  75. Guan-Yu Chen, Hsiao-Chiao Shiah, Hung-Ju Su, Chi-Yuan Chen, Yung-Jen Chuang, Wen-Hsin Lo, Jie-Len Huang, Ching-Kuang Chuang, Shiaw-Min Hwang, and Yu-Chen Hu. Baculovirus Transduction of Mesenchymal Stem Cells Triggers the Toll-Like Receptor 3 Pathway. JOURNAL OF VIROLOGY, Oct. 2009, p.10548-10556. (PubMed)
  76. Meng Zhao, Hong-wei He, Huan-xing Sun, Kai-huan Ren and Rong-guang Shao. Dual knockdown of N-ras and epiregulin synergistically suppressed the growth of human hepatoma cells. Biochemical and Biophysical Research Communications, Volume 387, Issue 2, 18 September 2009, Pages 239-244. (PubMed)
  77. Tao Deng, Ying Kuang, Long Wang, Jiang Li, Zhugang Wang and Jian Fei. An essential role for DNA methyltransferase 3a in melanoma tumorigenesis. Biochemical and Biophysical Research Communications, Volume 387, Issue 3, 25 September 2009, Pages 611-616. (PubMed)
  78. Provaznikova D, Geierova V, Kumstyrova T, Kotlin R, Mikulenkova D, Zurkova K, Matoska V, Hrachovinova I, Rittich S. Clinical manifestation and molecular genetic characterization of MYH9 disorders. Platelets, August 2009;20(5):289-296. (PubMed)
  79. Seung-Hyun Jung, Seung-Hun Shin, Seon-Hee Yim, Hye-Sun Choi, Sug-Hyung Lee, and Yeun-Jun Chung. Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array. EXPERIMENTAL and MOLECULAR MEDICINE, Vol. 41, No. 7, 462-470, July 2009. (PubMed)
  80. Cheng WY, Lien JC, Hsiang CY, Wu SL, Li CC, Lo HY, Chen JC, Chiang SY, Liang JA, Ho TY. Comprehensive evaluation of a novel nuclear factor-kappaB inhibitor, quinoclamine, by transcriptomic analysis. Br J Pharmacol. 2009 Jul;157(5):746-56. Epub 2009 Apr 30. (PubMed)
  81. Hsiang CY, Chen YS, Ho TY. Nuclear factor-kappaB bioluminescence imaging-guided transcriptomic analysis for the assessment of host-biomaterial interaction in vivo. Biomaterials. 2009 Jun;30(17):3042-9. Epub 2009 Feb 27. (PubMed)
  82. Vera Huang, Xin Lu, Yong Jiang and Jean YJ Wang. Effect of hydroxyurea on the promoter occupancy profiles of tumor suppressor p53 and p73. BMC Biology 2009 Jun 26, 7:35. (PubMed)
  83. Younghoon Kim, Sejong Oh, Sungsu Park, Sae Hun Kim. Interactive transcriptome analysis of enterohemorrhagic Escherichia coli (EHEC) O157:H7 and intestinal epithelial HT-29 cells after bacterial attachment. Int J Food Microbiol. 2009 May 31;131(2-3):224-32. (PubMed)
  84. Su SY, Hsieh CL, Wu SL, Cheng WY, Li CC, Lo HY, Ho TY, Hsiang CY. Transcriptomic analysis of EGB 761-regulated neuroactive receptor pathway in vivo. J Ethnopharmacol. 2009 May 4;123(1):68-73. Epub 2009 Mar 4. (PubMed)
  85. Lynn KS, Li LL, Lin YJ, Wang CH, Sheng SH, Lin JH, Liao W, Hsu WL, Pan WH. A neural network model for constructing endophenotypes of common complex diseases: an application to male young-onset hypertension microarray data. Bioinformatics. 2009 Apr 15;25(8):981-8. Epub 2009 Feb 23. (PubMed)
  86. Wu XX, Wan T, Wu HJ, Zhi G, Xiao CS, Gao CQ, Wu JJ. Identification of differentially expressed genes in myocardium of patients with heart failure by human whole genomic oligonucleotide microarray-assisted pathways analysis. Zhonghua Xin Xue Guan Bing Za Zhi. 2009 Feb; 37(2):120-5. (PubMed)
  87. Liang JA, Wu SL, Lo HY, Hsiang CY, Ho TY. Vanillin inhibits matrix metalloproteinase-9 expression through down-regulation of nuclear factor-kappaB signaling pathway in human hepatocellular carcinoma cells. Mol Pharmacol. 2009 Jan;75(1):151-7. Epub 2008 Oct 3. (PubMed)
  88. Mei N, Guo L, Tseng J, Dial SL, Liao W, Manjanatha MG. Gene expression changes associated with xenobiotic metabolism pathways in mice exposed to acrylamide. Environ Mol Mutagen. 2008 Dec;49(9):741-5. (PubMed)
  89. Marjani SL, Le Bourhis D, Vignon X, Heyman Y, Everts RE, Rodriguez-Zas SL, Lewin HA, Renard JP, Yang X, Tian XC. Embryonic gene expression profiling using microarray analysis. Reprod Fertil Dev. 2009;21(1):22-30. (PubMed)
  90. Zhao Y, Yin X, Qin H, Zhu F, Liu H, Yang W, Zhang Q, Xiang C, Hou P, Song Z, Liu Y, Yong J, Zhang P, Cai J, Liu M, Li H, Li Y, Qu X, Cui K, Zhang W, Xiang T, Wu Y, Zhao Y, Liu C, Yu C, Yuan K, Lou J, Ding M, Deng H. Two supporting factors greatly improve the efficiency of human iPSC generation. Cell Stem Cell. 2008 Nov 6;3(5):475-9. (PubMed)
  91. Lee EJ, Lee BB, Kim SJ, Park YD, Park J, Kim DH. Histone deacetylase inhibitor scriptaid induces cell cycle arrest and epigenetic change in colon cancer cells. INTERNATIONAL JOURNAL OF ONCOLOGY 2008 Oct;33:767-776. (PubMed)
  92. Yong-Bok Jeong, Tae-Min Kim and Yeun-Jun Chung. CGHscape: A Software Framework for the Detection and Visualization of Copy Number Alterations. Genomics & Informatics Vol. 6(3)126-129, September 2008. (KoreaMed)
  93. Cheng WY, Wu SL, Hsiang CY, Li CC, Lai TY, Lo HY, Shen WS, Lee CH, Chen JC, Wu HC, Ho TY. Relationship Between San-Huang-Xie-Xin-Tang and its herbal components on the gene expression profiles in HepG2 cells. Am J Chin Med. 2008; 36(4) :783-97. (PubMed)
  94. Nasser El-Okdi, Sleiman Smaili, Vanamala Raju, Amjad Shalini Gupta, Larisa Fedorova, Jihad Elkareh, Sankaridrug Periyasamy, Anna P. Shapiro, M. Bashar Kahaleh, Deepak Malhotra, Zijian Xie, Khew Voon Chin, and Joseph I. Shapiro. Effects of cardiotonic steroids on dermal collagen synthesis and wound healing. J Appl Physiol;105:30-36, 2008. (PubMed)
  95. Dan-Kai Yang, Jie-Len Huang, Chia-Chun Chen, Hung-Ju Su and Jui-Chuang Wu. Enhancement of target-DNA hybridization efficiency by pre-hybridization on sequence-orientated micro-arrayed probes. Journal of the Chinese Institute of Chemical Engineers, Volume 39, Issue 3, May 2008, Pages 187-193. (ITRI IR)
  96. Fong S, Shoemaker M, Cadaoas J, Lo A, Liao W, Tagliaferri M, Cohen I, Shtivelman E. Molecular mechanisms underlying selective cytotoxic activity of BZL101, an extract of Scutellaria barbata towards breast cancer cells. Cancer Biol Ther. 2008 Apr;7(4):577-86. (PubMed)
  97. Cheng WY, Hsiang CY, Bau DT, Chen JC, Shen WS, Li CC, Lo HY, Wu SL, Chiang SY, Ho TY. Microarray analysis of vanillin-regulated gene expression profile in human hepatocarcinoma cells. Pharmacol Res. 2007 Dec;56(6):474-82. (PubMed)
  98. Ahmed FE. Microarray RNA transcriptional profiling: part I. Platforms, experimental design and standardization. Expert Rev Mol Diagn. 2006 Jul;6(4):535-50. (PubMed)
  99. Pan WH, Lynn KS, Chen CH, Wu YL, Lin CY, Chang HY. Using endophenotypes for pathway clusters to map complex disease genes. Genet Epidemiol. 2006 Feb;30(2):143-54. (PubMed)
  100. Liu AC, Chen LY, Chiou CF, Su HJ, Chan YC, Tasi PH, Chen SJ, Chen WY. Thermodynamics and mechanism of ssDNA hybridization below the melting temperature by isothermal titration calorimetry. Thermochimica Acta. Volume 433, Issues 1-2, 1 August 2005, Pages 83-87. (ScienceDirect)
  101. Chien FC, Liu JS, Su HJ, Kao LA, Chiou CF, Chen WY, Chen SJ. An investigation into the influence of secondary structures on DNA hybridization using surface plasmon resonance biosensing. Chem Phys Lett. Volume 397, Issues 4-6, 21 October 2004, Pages 429-434. (ScienceDirect)
     

Books (4)

  1. Michael J. Allen, Bela Tiwari, Matthias E. Futschik, and Debbie Lindel. Methods in aquatic virus ecology: Construction of microarrays and their application to virus analysis. MANUAL of AQUATIC VIRAL ECOLOGY, Chapter 5, p.34-56. (2009)
  2. Yu-l Weng, Tim H.-M. Huang, and Pearlly S. Yan. Methylated DNA Immunoprecipitation and Microarray-Based Analysis: Detection of DNA Methylation in Breast Cancer Cell Lines. Molecular Endocrinology, Methods in Molecular Biology 590, Chapter 10, p.165-176. (2009)
  3. Nasser Chegini, PhD and Xiaoping Luo, MD. Gene Expression Profiling in Leiomyoma in Response to GnRH Therapy and TGF-β. Contemporary Endocrinology, Genomics in Endocrinology, Chapter 4, p.67-82. (2008)
  4. Mark Dodgson, John Mathews, Tim Kastelle and Mei-Chih Hu. The evolving nature of Taiwan's national innovation system: The case of biotechnology innovation networks. Research Policy, Volume 37, Issue 3, April 2008, Pages 430-445.(2008)

Posters (6)

  1. A.H.K. Tam, C.M. Wong and I.O.L. Ng. (688) Epigenetic dysregulation of hsa-miR-9 in hepatocellular carcinoma. European Journal of Cancer Supplements. Volume 8, Issue 5, June 2010, Pages 173-174, 21st Meeting of the European Association for Cancer Research.
  2. Ing. Jan Verner, Ph.D., RNDr. Jitka Kabáthová, RNDr. Zbynĕk Zdráhal, Dr., Mgr. Alexandra Tomancová, MUDr. Yvona Brychtová, MUDr. Jana Volejníková, RNDr. Šárka Pospíšilová, Ph.D., prof. MUDr. Jiří Mayer, CSc. Analýza genového proi lu reakce štĕpu proti hostiteli (GVHD) s využitím čipové technologie. V. DNY DIAGNOSTICKÉ, PREDIKTIVNÍ A EXPERIMENTÁLNÍ ONKOLOGIE & II. SYMPOZIUM O CÍLENÉ BIOLOGICKÉ LÉČBĚ (November 25-27, 2009).
  3. Cheng MC, Liao DL, Hsu SH, Lai CH, Chen CH. Identification of genetic risk factors of drug addiction using genomics approach. World Congress on Psychiatric Genetics (October 11-15, 2008).
  4. Lai Y.C., Ma C. and Tyrelle G. D. Whole Genome Microarray Probe Content Interoperability for Diagnostic Applications. International Conference Intelligent Systems for Molecular Biology (July 21-25, 2007).
  5. Tseng J, Chen K, Wang S, Chen I, Kao S, Lai YC, Tyrelle G, Liao W, Pan CC, Jordan B, and Ma C. Standardization and Future Usage Expansion of Gene Expression Microarrays. Advances in Microarray Technology 2006 (October 31-November 02, 2006).
  6. Tseng J, Chen I, Wang S, Chen K, Ho M, Jokhadze G, Liao W, Ma C, and Pan CC. A Push for Usage Expansion in DNA Microarrays-Standardization and Cost. The 12th Annual Chips to Hits (September 12, 2005).